Last updated: 2020-02-20

Checks: 2 0

Knit directory: MHWNWA/

This reproducible R Markdown analysis was created with workflowr (version 1.6.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: cef9d21

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    LaTeX/SOM_node_summary.docx
    Ignored:    LaTeX/SOM_node_summary.pdf
    Ignored:    data/NAPA/NAPA_clim_U.Rda
    Ignored:    data/NAPA/NAPA_clim_V.Rda
    Ignored:    data/NAPA/NAPA_clim_W.Rda
    Ignored:    data/NAPA/NAPA_clim_emp_ice.Rda
    Ignored:    data/NAPA/NAPA_clim_emp_oce.Rda
    Ignored:    data/NAPA/NAPA_clim_fmmflx.Rda
    Ignored:    data/NAPA/NAPA_clim_mldkz5.Rda
    Ignored:    data/NAPA/NAPA_clim_mldr10_1.Rda
    Ignored:    data/NAPA/NAPA_clim_qemp_oce.Rda
    Ignored:    data/NAPA/NAPA_clim_qla_oce.Rda
    Ignored:    data/NAPA/NAPA_clim_qns.Rda
    Ignored:    data/NAPA/NAPA_clim_qsb_oce.Rda
    Ignored:    data/NAPA/NAPA_clim_qt.Rda
    Ignored:    data/NAPA/NAPA_clim_runoffs.Rda
    Ignored:    data/NAPA/NAPA_clim_ssh.Rda
    Ignored:    data/NAPA/NAPA_clim_sss.Rda
    Ignored:    data/NAPA/NAPA_clim_sst.Rda
    Ignored:    data/NAPA/NAPA_clim_taum.Rda
    Ignored:    data/NAPA/NAPA_clim_vars.Rda
    Ignored:    data/NAPA/NAPA_clim_vecs.Rda
    Ignored:    data/NAPA/synoptic_vec_states.Rda
    Ignored:    data/SOM/packet.Rda
    Ignored:    data/SOM/synoptic_states.Rda
    Ignored:    data/SOM/synoptic_states_other.Rda
    Ignored:    data/anom/ALL_anom.Rda
    Ignored:    data/anom/ALL_other.Rda
    Ignored:    data/anom/ERA5_mslp_anom.Rda
    Ignored:    data/anom/ERA5_qnet_anom.Rda
    Ignored:    data/anom/ERA5_t2m_anom.Rda
    Ignored:    data/anom/ERA5_u_anom.Rda
    Ignored:    data/anom/ERA5_v_anom.Rda
    Ignored:    data/anom/GLORYS_mld_anom.Rda
    Ignored:    data/anom/GLORYS_u_anom.Rda
    Ignored:    data/anom/GLORYS_v_anom.Rda
    Ignored:    data/anom/OISST_sst_anom.Rda
    Ignored:    data/base/ERA5_lhf.Rda
    Ignored:    data/base/ERA5_lwr.Rda
    Ignored:    data/base/ERA5_mslp.Rda
    Ignored:    data/base/ERA5_qnet.Rda
    Ignored:    data/base/ERA5_shf.Rda
    Ignored:    data/base/ERA5_swr.Rda
    Ignored:    data/base/ERA5_t2m.Rda
    Ignored:    data/base/ERA5_u.Rda
    Ignored:    data/base/ERA5_v.Rda
    Ignored:    data/base/GLORYS_mld.Rda
    Ignored:    data/base/GLORYS_u.Rda
    Ignored:    data/base/GLORYS_v.Rda
    Ignored:    data/base/OAFlux.Rda
    Ignored:    data/base/OISST_sst.Rda
    Ignored:    data/clim/ALL_clim.Rda
    Ignored:    data/clim/ERA5_mslp_clim.Rda
    Ignored:    data/clim/ERA5_qnet_clim.Rda
    Ignored:    data/clim/ERA5_t2m_clim.Rda
    Ignored:    data/clim/ERA5_u_clim.Rda
    Ignored:    data/clim/ERA5_v_clim.Rda
    Ignored:    data/clim/GLORYS_mld_clim.Rda
    Ignored:    data/clim/GLORYS_u_clim.Rda
    Ignored:    data/clim/GLORYS_v_clim.Rda
    Ignored:    data/clim/OISST_sst_clim.Rda
    Ignored:    data/comparison/node_mean_all_anom.Rda
    Ignored:    data/comparison/packet_all.Rda
    Ignored:    data/comparison/packet_all_anom.Rda
    Ignored:    data/comparison/packet_nolab.Rda
    Ignored:    data/comparison/packet_nolab14.Rda
    Ignored:    data/comparison/packet_nolabgsl.Rda
    Ignored:    data/comparison/packet_nolabmod.Rda
    Ignored:    data/comparison/som_all.Rda
    Ignored:    data/comparison/som_all_anom.Rda
    Ignored:    data/comparison/som_nolab.Rda
    Ignored:    data/comparison/som_nolab14.Rda
    Ignored:    data/comparison/som_nolab_16.Rda
    Ignored:    data/comparison/som_nolab_9.Rda
    Ignored:    data/comparison/som_nolabgsl.Rda
    Ignored:    data/comparison/som_nolabmod.Rda
    Ignored:    data/eddy_trajectory_2.0exp_19930101_20180118.nc
    Ignored:    talk/IMBeR_2019.html
    Ignored:    talk/MHWNWA.html

Unstaged changes:
    Modified:   code/workflow.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File Version Author Date Message
html cdefabd robwschlegel 2020-02-20 Build site.
Rmd 617a8cb Robert William Schlegel 2020-02-13 Decent draft of poster. Still need to re-render figure 2 but need tikoraluk to do it.
Rmd e341f9b robwschlegel 2020-01-24 Re-processed the figures to remove the effy tracks from them.
html a7fbd91 robwschlegel 2019-08-28 Build site.
Rmd 59cf771 robwschlegel 2019-08-22 Polished up the variable prep vignette
html 826c73d robwschlegel 2019-08-15 Build site.
html 143b1a6 robwschlegel 2019-08-15 Build site.
html 20ae166 robwschlegel 2019-08-11 Build site.
html 19bea26 robwschlegel 2019-08-11 Build site.
html 2652a3a robwschlegel 2019-08-11 Build site.
html f0d2efb robwschlegel 2019-08-07 Build site.
html aa82e6e robwschlegel 2019-07-31 Build site.
html 7792f24 robwschlegel 2019-07-24 Build site.
html 7cc8ec3 robwschlegel 2019-07-24 Build site.
html 81e961d robwschlegel 2019-07-09 Build site.
html c23c50b robwschlegel 2019-06-10 Build site.
html 028d3cc robwschlegel 2019-06-10 Build site.
html c61a15f robwschlegel 2019-06-06 Build site.
html 6dd6da8 robwschlegel 2019-06-06 Build site.
html d544295 robwschlegel 2019-05-23 Build site.
Rmd d8f2b99 robwschlegel 2019-05-23 Working on polygon vignette
html a29be6b robwschlegel 2019-05-13 Build site.
html ea61999 robwschlegel 2019-05-13 Build site.
Rmd f8f28b1 robwschlegel 2019-05-13 Skeleton files
html 81f4d53 Robert Schlegel 2019-05-13 Build site.
Rmd 6ca4940 Robert Schlegel 2019-05-13 First push
html 6ca4940 Robert Schlegel 2019-05-13 First push

This website contains the version controlled analyses used to determine the primary drivers of marine heatwaves (MHWs) in the Northwest Atlantic Ocean.

Please use the tabs above to navigate the site. The “Analyses” tabs contain workflows for discrete portions of the overall analysis. To see the raw code used for the workflow/pipeline of this project please follow the link in the top right of this page to the source code for this project. Once there the raw workflow code may be found in the code/workflow.R script. The functions etc. that this script relies on may be found in the code/functions.R script.

To jump straight to the SOM analysis results please click on “Analyses” -> “Node summaries”